Existing Modules

The following list shows exemplary processing modules that have been developed for mercure. If you would like to see your module included in this list, please reach out to us via the Discussion Board.

Mercure-TestModule

Docker Tag

mercureimaging/mercure-testmodule

Description

Simple demo module that shows how processing modules can be developed for

mercure. This module applies a Gaussian filter to the incoming image series.

Parameters

sigma: Filter strength (default: 7)

series_offset: Offset added to series number (default: 1000)

Code

https://github.com/mercure-imaging/mercure-testmodule

Mercure-ExampleInference

Docker Tag

mercureimaging/mercure-exampleinference

Description

Simple demo module that shows how AI-based inference can be implemented, in this

example using ONNX Runtime as inference engine. The module performs a prostate

segmentation on a T1W prostate MRI scan and generates a segmentation overlay.

Parameters

color: Color of the segmentation overlay (name or #rrggbb code, default: yellow)

transparency: Transparency of the segmentation mask (default: 0.75)

series_offset: Offset added to series number (default: 1000)

Code

https://github.com/mercure-imaging/mercure-exampleinference

Mercure-Anonymizer

Docker Tag

mercureimaging/mercure-anonymizer

Description

Flexible DICOM anonymization module for mercure that supports project-specific

anonymization settings based on the AET under which the DICOM were received.

Parameters

See documentation for usage information

Code

https://github.com/mercure-imaging/mercure-anonymizer

Mercure-TotalSegmentator

Docker Tag

mercureimaging/mercure-totalsegmentator

Description

mercure integration of the TotalSegmentator model for segmentation of CT scans,

developed by the University Hospital Basel:

https://github.com/wasserth/TotalSegmentator

Tutorial

https://github.com/mercure-imaging/mercure-totalsegmentator/blob/main/tutorial_mercure-totalsegmentator.ipynb

Code

https://github.com/mercure-imaging/mercure-totalsegmentator

Mercure-MonaiSegment

Docker Tag

mercureimaging/mercure-monaisegment

Description

MONAI Segment is a mercure module for rapid deployment of segmentation models

hosted in the MONAI model zoo:

https://monai.io/model-zoo.html

Tutorial

https://github.com/mercure-imaging/mercure-monaisegment/blob/main/tutorial_mercure-MonaiSegment.ipynb

Code

https://github.com/mercure-imaging/mercure-monaisegment